A few days ago, the body of Padre Pio was moved to the Chiesa San Pio (click on "Chiesa San Pio" to see a photogallery of the new church). More pictures of the church can be found in the website of the workshop that built it.
Some pictures from the official Padre Pio site:
Some pictures from the official Padre Pio site:
The body of the holy friar was entombed in this (pictures can be found here):